PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2601_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 234aa    MW: 26510.9 Da    PI: 7.4066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2601_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-1159107254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +  hn++Er+RR++ Ns f++Lr++lP +    ++ ls   +  + ++YI +L
  RrC2601_p2  59 KLIHNANERNRRKKTNSLFSTLRSCLPGS----DENLSNPRTISRSMQYIPEL 107
                 566*************************9....899**************887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.44957107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-958112No hitNo description
SuperFamilySSF474597.98E-1358119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1159121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-960107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-963113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRPLGPVFPN FGWVSKEEYE RDNLVEDDHS NCTSPDSSLG VSESSEGNRI NNNSAVIKKL  60
IHNANERNRR KKTNSLFSTL RSCLPGSDEN LSNPRTISRS MQYIPELKEQ VKKLTQKKED  120
ILVRISGQRG SYVMPQPKVA SSYVSTVFAT ELTDTEVMVQ ISSSKNHNFS IYNVLSGLEE  180
DGFVLVDVSS SSCWGERLFY TLHLQVDKVD SYKLICEDLS RRVLFLFEKC GKLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102594.11e-120PREDICTED: transcription factor ORG3-like
SwissprotQ9M1K11e-93ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078JU881e-124A0A078JU88_BRANA; BnaUnng04210D protein
STRINGBra014970.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-95bHLH family protein